About

GIN is developed by the CLAIR Group at the University of Michigan.

People

Publications

Arzucan Ozgur, Thuy Vu, Gunes Erkan, and Dragomir R. Radev. "Identifying gene-disease associations based on centrality on a literature mined gene interaction network", Bioinformatics/Proc. of ISMB, 2008. (accepted)
F. Leitner, M. Krallinger, C. Rodriguez-Penagos, J. Hakenberg, C. Plake, C-J. Kuo, C-N. Hsu, R. T-H. Tasi, H-C. Hung, W. W. Lau, C. A. Johnson, R. Saetre, K. Yoshida, Y. H. Chen, S. Kim, S-Y. Shin, B-T. Zhang, W. A. Baumgartner, Jr., L. Hunter, B. Haddow, M. Matthew, X. Wang, P. Ruch, F. Ehrler, A. Ozgur, G. Erkan, D. R. Radev, M. Krauthammer, T. Luong, R. Hoffmann, C. Sander, and A. Valencia. "Introducing meta-services for biomedical information extraction", Genome Biology, 2008. (accepted)
Aaron Elkiss, Siwei Shen, Anthony Fader, Gunes Erkan, David States, and Dragomir Radev. "Blind men and elephants: What do citation summaries tell us about a research article?", JASIST, 59(1):51Ð62, 2008. (PDF)
Gunes Erkan and Dragomir Radev. "LexRank: Graph-based Lexical Centrality as Salience in Text Summarization", Journal of Artificial Intelligence Research (JAIR) , 2004, 22:457-479. (PDF)
Gunes Erkan, Arzucan Ozgur, and Dragomir Radev. "Semi-supervised classification for extracting protein interaction sentences using dependency parsing", In Proceedings of the Conference of Empirical Methods in Natural Language Processing (EMNLP '07), Prague, Czech Republic, June 28-30 2007. (PDF)
Gunes Erkan, Arzucan Ozgur, and Dragomir Radev. "Extracting Interacting Protein Pairs and Evidence Sentences by using Dependency Parsing and Machine Learning Techniques", Biocreative Workshop, 2007. (PDF)
Gunes Erkan, Arzucan Ozgur, and Dragomir Radev. "Extracting protein interactions using syntactic dependencies", NCIBI All-Hands Meeting Poster Session, 2007. (PDF)
Anthony Fader, Gunes Erkan, Arzucan Ozgur, Alex Ade, Joshua Gerrish, Mark Schaller, David States, and Dragomir Radev. "GIN: Gene Interaction Network", NCIBI All-Hands Meeting Poster Session, 2007. (PDF)

Related CLAIR Projects

External Tools and Resources

The following external tools and resources were used to develop GIN:

Logo

The GIN logo was created by Jon Wilcox.

Acknowledgments

This work has been supported in part by grants R01 LM008106 and U54 DA021519 from the National Institutes of Health as well as grant IDM 0329043 "Probabilistic and link-based Methods for Exploiting Very Large Textual Repositories" from the National Science Foundation.